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Showing :
Combat SVA
•
reset
3
votes
6
replies
2.3k
views
is it necessary to check batch effect in this case? and how to?
svaseq
combat sva
RANseq
batcheffect
removebatcheffect
updated 7.6 years ago by
Jakub
▴ 50 • written 7.6 years ago by
amoltej
▴ 10
0
votes
4
replies
1.9k
views
ComBat: Adjustment for 3experimental variables
ENmix
combat.mc
illumina450k
combat sva
7.9 years ago
DSP
• 0
7
votes
3
replies
3.1k
views
SVA: Including variable of interest in ComBat model matrix
combat sva
SVA
sva
ComBat
batch effect
updated 8.1 years ago by
W. Evan Johnson
▴ 850 • written 8.1 years ago by
John Townsend
▴ 20
1
vote
2
replies
2.5k
views
cross platform normalization in R
R
Combat SVA
updated 8.3 years ago by
Steve Lianoglou
★ 13k • written 8.3 years ago by
nazaninhoseinkhan
• 0
1
vote
2
replies
1.3k
views
Batch effect problem using SVA showing problems
SVA
combat sva
batch effect
updated 7.7 years ago by
Jeff Leek
▴ 650 • written 7.7 years ago by
amoltej
▴ 10
1
vote
2
replies
1.5k
views
is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva
batch effect
comba
updated 7.5 years ago by
Vegard Nygaard
▴ 110 • written 7.5 years ago by
amoltej
▴ 10
0
votes
2
replies
954
views
Problem with Combat batch adjustment
combat sva
7.4 years ago
vinnu260
▴ 10
0
votes
1
reply
3.4k
views
SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA
combat sva
leek
updated 3.0 years ago by
chase.mateusiak
• 0 • written 7.0 years ago by
amoltej
▴ 10
1
vote
1
reply
1.6k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 7.7 years ago by
Jeff Leek
▴ 650 • written 7.7 years ago by
svlachavas
▴ 830
0
votes
1
reply
1.2k
views
Combat prior plots good enough?
combat
combat sva
6.6 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
1.2k
views
RPKM counts with SVA package & Combat with SVA?
batch effect
combat sva
sva
7.2 years ago
Ahdee
▴ 50
0
votes
0
replies
1.2k
views
What is the input for Combat in R?
combat sva
input files
7.2 years ago
arisarkar88
▴ 40
0
votes
0
replies
889
views
SVA: Reference manual improvment
combat sva
sva
7.0 years ago
alice.anlind
• 0
0
votes
0
replies
1.2k
views
removing batch effects using sva combat and linear regression
combat sva
microarry
Jeff leek
6.8 years ago
DataFanatic
▴ 10
0
votes
0
replies
631
views
Number of SVA increased after ComBat
combat sva
6.1 years ago
jonellevillar
• 0
0
votes
0
replies
1.1k
views
SVA: Using ComBat for synthetic genetic array data
combat sva
sga
combat
batch effect
8.0 years ago
John Townsend
▴ 20
0
votes
0
replies
931
views
SVA) Error while using 'sva' package - combat
combat sva
7.7 years ago
kkwon
• 0
0
votes
0
replies
823
views
Help with multiple batch effects
combat sva
batch effect
5.9 years ago
Fp
• 0
0
votes
0
replies
935
views
ComBat covariate bias when building centroid based predictors
combat
combat sva
pamr
limma design matrix
sva
5.7 years ago
jmsendoya
• 0
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thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
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did you find a solution? I´m having the same problem
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• 0
Please ignore, i didnt copy all the scrip
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